TIPP specifications

Information


Unique identifier OMICS_12989
Name TIPP
Alternative name Taxon Identification and Phylogenetic Profiling
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A query sequence `q` or a set of query sequences `Q`
Output data The taxonomic lineage of `q` or an abundance profile estimated on `Q`
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Java, Blast
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Tandy Warnow <>

Publication for Taxon Identification and Phylogenetic Profiling

TIPP institution(s)
Department of Computer Science, University of Texas, Austin, TX, USA; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA; Department of Bioengineering, The University of Illinois, Urbana, IL, USA; Department of Computer Science, University of Illinois, Urbana, IL, USA
TIPP funding source(s)
Guggenheim Foundation Fellowship; National Science Foundation, grants DBI-1062335, DBI-1461364 and DEB 0733029; HHMI International Predoctoral Fellowship; iPlant Collaborative U.S. National Science Foundation, grant DBI-1265383; National Institutes of Health grant, R01-AI-100947; US National Science Foundation, IR/D program.

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