TiQuant specifications


Unique identifier OMICS_09077
Name TiQuant
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Adrian Friebel <>

Publication for TiQuant

TiQuant in publications

PMCID: 4764584
PMID: 26673893
DOI: 10.7554/eLife.11214.039

[…] and image acquisition. we moved this comparison from the results section to the discussion section (fifth paragraph) and expanded it. we applied our pipeline to a publicly available dataset (tiquant: http://ms.izbi.uni-leipzig.de/index.php/software) (hammad et al., 2014, friebel et al., 2015). as shown in the , our pipeline produces qualitatively more accurate segmentations than previous […]

PMCID: 3996365
PMID: 24748404
DOI: 10.1007/s00204-014-1243-5

[…] appear red (fig. ), and the position of the central vein is identified by a ring of gs-positive hepatocytes (white).fig. 4, image analysis and quantification can be performed using our software tiquant (www.msysbio.com/tiquant). this tool allows the quantitative analysis of key parameters of hepatocytes and the sinusoidal as well as bile canalicular networks (table ). the results in table  […]

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TiQuant institution(s)
Interdisciplinary Centre for Bioinformatics (IZBI), University of Leipzig, Germany; Leibniz Research Centre for Working Environment and Human Factors (IfADo), Dortmund, Germany; Department of Forensic Medicine and Veterinary Toxicology, Faculty of Veterinary Medicine, South Valley University, Qena, Egypt; Institut National de Recherche en Informatique et en Automatique (INRIA) Unit Rocquencourt, Le Chesnay, France
TiQuant funding source(s)
Virtual Liver Network; EU-Notox; BMBF liver simulator; ANR-iFLOW

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