TISdb specifications

Information


Unique identifier OMICS_06870
Name TISdb
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Shu-Bing Qian

Publication for TISdb

TISdb citations

 (2)
library_books

Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites

2016
PLoS Comput Biol
PMCID: 5140048
PMID: 27923063
DOI: 10.1371/journal.pcbi.1005198

[…] mputed by the codonR software []. Annotation of upstream translation initiation sites (uTISs) was derived by Global Translation Initiation sequencing (GTI-seq) in HEK293 cells and downloaded from the TISdb database []. We included an additional mapping of upstream translation initiation sites which was obtained by Quantitative Translation Initiation sequencing (QTI-seq) in HEK293 cells [].Upstream […]

library_books

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

2016
Nucleic Acids Res
PMCID: 5314775
PMID: 27923997
DOI: 10.1093/nar/gkw1190

[…] RUST (), riboSeqR () and RiboTools (). Publicly available RiboSeq data also can be accessed at RPFdb (). Furthermore, sORFs.org () collects ORFs whose translation is supported with RiboSeq data, and TISdb () is a collection of translation initiation sites predicted from RiboSeq data. Several stand alone tools were developed for differential gene expression analysis (anota (), Babel (), RiboDiff ( […]

TISdb institution(s)
Division of Nutritional Sciences, Cornell University, Ithaca, NY, USA

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