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TISHunter specifications

Information


Unique identifier OMICS_09990
Name TISHunter
Interface Web user interface
Restrictions to use None
Input data mRNA sequences in FASTA format
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Li H.

Publication for TISHunter

TISHunter citations

 (2)
library_books

Transductive learning as an alternative to translation initiation site identification

2017
BMC Bioinformatics
PMCID: 5290616
PMID: 28152994
DOI: 10.1186/s12859-017-1502-6

[…] with isvm. the isvm and tsvm approaches were implemented in the transdutis tool, transdutis-i and transdutis-t respectively, available in a web interface. these approaches were compared with the tishunter, tis miner, netstart tools, presenting satisfactory results., in relation to precision, the results are similar for the isvm and tsvm classifiers. however, the results show […]

library_books

Representative transcript sets for evaluating a translational initiation sites predictor

2009
BMC Bioinformatics
PMCID: 2712473
PMID: 19573244
DOI: 10.1186/1471-2105-10-206

[…] well demonstrated., in order to demonstrate the applicability of the proposed algorithm, we have employed several state-of-the-art predictors for further evaluation, including netstart [], cub [], tishunter [], startscan [], genscan [] and glimmerhmm [], where the first four software are specialized tis predictors and the latter two are designed to predict entire genes. nevertheless, […]


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TISHunter institution(s)
Department of Computer Science and Engineering, University of California, Riverside, CA, USA

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