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Tissue microarray data analysis bioinformatics software tools

Tissue microarray (TMA) allows multiplexed analysis of tissue samples and are frequently used to estimate biomarker protein expression in tumour biopsies (Kononen et al., 1998; Camp et al., 2008).

X-tile
Desktop

X-tile

A bio-informatics tool for biomarker assessment and outcome-based cut-point…

A bio-informatics tool for biomarker assessment and outcome-based cut-point optimization.

Stanford TMA…
Desktop

Stanford TMA software website

Software Tools for High-Throughput Analysis and Archiving of…

Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays.

TMA Navigator
Web

TMA Navigator

An open access web application for analysis of TMA data and related…

An open access web application for analysis of TMA data and related information, accommodating categorical, semi-continuous and continuous expression scores. Non-biological variation, or batch…

TMAinspiration
Desktop

TMAinspiration Tissue MicroArray inspiration

Analyzes the cooperative behavior of all measured markers in a multifactorial…

Analyzes the cooperative behavior of all measured markers in a multifactorial tissue microarray (TMA) approach. The TMAinspiration method is specifically focusing on the demands of the TMA analysis…

TAMEE
Dataset

TAMEE Tissue Array Management and Evaluation Environment

A web-based database application for the management and analysis of data…

A web-based database application for the management and analysis of data resulting from the production and application of TMAs.

ImageMiner
Desktop

ImageMiner

Provides users to perform high-throughput comparative analysis and reproducible…

Provides users to perform high-throughput comparative analysis and reproducible characterization of expression profiles in imaged tissue microarrays (TMAs). ImageMiner applies cascades of…

TMA-Combiner
Desktop

TMA-Combiner

A Simple Software Tool to Permit Analysis of Replicate Cores on Tissue…

A Simple Software Tool to Permit Analysis of Replicate Cores on Tissue Microarrays.

TAD
Web

TAD

Consists of an Active Server Page web interface to a relational SQL database…

Consists of an Active Server Page web interface to a relational SQL database that automates recording scores and linking them with clinical data for future interpretation.

cancergrid-tma
Web

cancergrid-tma

An open source web-based application for remote scoring of tissue microarray…

An open source web-based application for remote scoring of tissue microarray (TMA) images, which exploits the value of Microsoft Silverlight Deep Zoom to provide an intuitive interface for zooming…

HiPath
Desktop

HiPath

Determines programmed death-ligand 1 (PD-L1) protein expression by calculating…

Determines programmed death-ligand 1 (PD-L1) protein expression by calculating the percentage of viable tumor cells showing partial or complete membrane staining. HiPath is a highly intelligent…

TMAJ
Desktop

TMAJ Tissue MicroArray J

A statistical tool designed to support information and images related to tissue…

A statistical tool designed to support information and images related to tissue micro-arrays. TMAJ contains support for multiple organ systems, multiple users, image analysis, and is designed to be…

TMA Foresight
Desktop

TMA Foresight

A tissue microarray data analysis software designed to explore the relatedness…

A tissue microarray data analysis software designed to explore the relatedness of biomarker expression and clinico-pathological variates with the outcome.

PathXL TMA
Desktop

PathXL TMA

TMA experiments can be performed anytime, anywhere, reducing administrative…

TMA experiments can be performed anytime, anywhere, reducing administrative costs and time.

Slidepath
Desktop

Slidepath

A high performance, intuitive client viewer with integrated reporting…

A high performance, intuitive client viewer with integrated reporting functionality that can be used as a standalone viewer for accessing slides locally.

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