TissueMiner statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

TissueMiner specifications


Unique identifier OMICS_23880
Name TissueMiner
Software type Framework/Library, Toolkit/Suite
Interface Command line interface
Restrictions to use None
Output data The tracked-cell and the cell-division masks.
Operating system Unix/Linux
Programming languages C++, R, Scala, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Suzanne Eaton <>
  • person_outline Frank Julicher <>

Publication for TissueMiner

TissueMiner institution(s)
Division of Cell Polarity, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; Institut Pasteur, Paris, France; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany; Department of Physics, Syracuse University, Syracuse, NY, USA; Institut de Biologie du Developpement de Marseille, Marseille, France; The Francis Crick Institute, Lincoln’s Inn Fields Laboratories, London, UK
TissueMiner funding source(s)
Supported by the Max Planck Gesellschaft, and by the BMBF.

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