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TissueNet | Database of human tissue protein-protein interactions

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Associates experimentally-identified protein-protein interactions (PPIs) with human tissues. TissueNet allows users to select a protein and a tissue, and to obtain a network view of the query protein and its tissue-associated PPIs. TissueNet v.2 is an updated version of the TissueNet database. It includes over 40 human tissues profiled via RNA-sequencing or protein-based assays. Users can select their preferred expression data source and interactively set the expression threshold for determining tissue-association. The output of TissueNet v.2 emphasizes qualitative and quantitative features of query proteins and their PPIs. The tissue-specificity view highlights tissue-specific and globally-expressed proteins, and the quantitative view highlights proteins that were differentially expressed in the selected tissue relative to all other tissues. Together, these views allow users to quickly assess the unique versus global functionality of query proteins. Thus, TissueNet v.2 offers an extensive, quantitative and user-friendly interface to study the roles of human proteins across tissues.

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TissueNet classification

  • Animals
    • Homo sapiens

TissueNet specifications

Unique identifier:
OMICS_01913
Database management system:
MySQL
Data access:
File download, Browse
Version:
2.0
Maintained:
Yes
Restrictions to use:
None
Community driven:
No
User data submission:
Allowed
Content license:
CC Attribution

TissueNet support

Documentation

Credits

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Publications

Institution(s)

Department of Clinical Biochemistry & Pharmacology, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel; National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel

Funding source(s)

This work was funded by the Israel Science Foundation (860/13).

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