TM-align protocols

TM-align specifications

Information


Unique identifier OMICS_03646
Name TM-align
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TM-align

TM-align IN pipelines

 (4)
2018
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] 2., the amino acid sequences were submitted to lomets [76] to generate 3d structures. the 3d structures predicted for osalba proteins (figure 6) were aligned to their respective templates in the tm-align server [77]. the predicted model was further analyzed in chimera 1.2 [78], which showed different number of α-helices, β-strands, and coils (figure 6). , the osalba proteins showed […]

2014
PMCID: 4131471
PMID: 25147569
DOI: 10.1155/2014/918143

[…] using clustal omega [15]. protein tertiary structure prediction was conducted via hhpred by the max-planck institute for developmental biology. superposition of protein structures was done by tm-align [16]. the structure of tlr1-tir (1fyv) was downloaded from the protein data bank (http://www.rcsb.org/pdb/home/home.do). the presentations of the 3d tir domain structures were accomplished […]

2012
PMCID: 3250427
PMID: 22235272
DOI: 10.1371/journal.pone.0029205

[…] 3d structure of the mutant protein was predicted using i-tasser fold recognition method [19]. the predicted structure was superimposed with the normal proinsulin structure (pdb ref: 2kqp) using tm-align [20] and visualised with pymol software (www.pymol.org)., competing interests: the authors have declared that no competing interests exist., funding: this work was supported by the centro de […]

2010
PMCID: 2816704
PMID: 20140205
DOI: 10.1371/journal.pone.0009071

[…] hpyav ββα-me motif was aligned pair-wise with the crystal structures of cole9 (pdb: 1v14), i-hmui (pdb: 1u3e), hpy99i (pdb: 3gox) and the kpni model built by nagaraja and colleagues [36] using the tm-align module [78] of strap [79]., we thank rich roberts, bill jack, and elisabeth raleigh for critical comments and discussions; barry stoddard for informing us of the hpyav homologs; jim ellard […]

TM-align institution(s)
Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, NY, USA

TM-align reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TM-align