TM-align pipeline

TM-align specifications


Unique identifier OMICS_03646
Name TM-align
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TM-align

TM-align citations

PMCID: 5924525

[…] 2., the amino acid sequences were submitted to lomets [76] to generate 3d structures. the 3d structures predicted for osalba proteins (figure 6) were aligned to their respective templates in the tm-align server [77]. the predicted model was further analyzed in chimera 1.2 [78], which showed different number of α-helices, β-strands, and coils (figure 6). , the osalba proteins showed […]

PMCID: 5459920

[…] p0cf37]. the alignment and the identity percentage were performed using clustal omega website5, version 1.2.4 (sievers et al., 2011)., for protein structure alignment and comparison, the algorithm tm-align (zhang and skolnick, 2005) was used. the superposed full-atom structure of the entire chains (without ligands and solvent) of ts1 and drosomycin was performed by vmd (visual molecular […]

TM-align institution(s)
Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, NY, USA

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