TM-Score specifications

Information


Unique identifier OMICS_16759
Name TM-Score
Interface Web user interface
Restrictions to use None
Input data The template/model structure, the experimental structure.
Input format .PDB
Output data The TM-score.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yang Zhang <>

Information


Unique identifier OMICS_16759
Name TM-Score
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The template/model structure, the experimental structure.
Input format .PDB
Output data The TM-score.
Operating system Unix/Linux
Programming languages Fortran, Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yang Zhang <>

TM-Score articles

TM-Score citations

 (2)
2015
PMCID: 4694711

[…] accuracy within the set of targets with correctly predicted folds. excluding the 8 targets where either evfold-plm (6) or rasrec-plm (2) had difficulties, rerasrec-plm still increased the average tm-score by 0.18 over evfold-plm from 0.60 to 0.78. in terms of rmsd and rmsdsse, rasrec-plm improved them from 5.6 å to 3.9 å and from 4.2 å to 2.9 å, respectively., we also compared the accuracy […]

2014
PMCID: 4280113

[…] quality of the predicted models and it is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations [102]; (2) the tm-score is a scale for measuring the structural similarity between two structures and is used to measure the accuracy of structure modeling when the native structure is known in order to test […]

TM-Score institution(s)
Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, New York, NY, USA; Department of Medical School, Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Molecular Biosciences, Center for Bioinformatics, University of Kansas, Lawrence, KS, USA
TM-Score funding source(s)
This work was supported in part by NIH grant GM-48835 of the Division of General Medical Sciences.

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