tmap statistics

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Citations per year

Number of citations per year for the bioinformatics software tool tmap
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Tool usage distribution map

This map represents all the scientific publications referring to tmap per scientific context
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Associated diseases

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Popular tool citations

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Protocols

tmap specifications

Information


Unique identifier OMICS_07266
Name tmap
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline B. Persson

Publications for tmap

tmap citations

 (13)
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Recombinant human dihydroxyacetonephosphate acyl transferase characterization as an integral monotopic membrane protein

2016
Biochem Biophys Res Commun
PMCID: 5146282
PMID: 27836547
DOI: 10.1016/j.bbrc.2016.11.019
call_split See protocol

[…] the following servers: HHpred, Quick2D , PredictProtein , Proteus 2.0 . The transmembrane (TM) helices/region prediction was performed by interrogating the following servers: POLYVIEW-2D (117–138) , TMAP (115–132, 168–196, 370–398, 565–580) , TMPRED (8–25, 165–194) , Octopus (510–560) . […]

library_books

In silico analysis of Brucella abortus Omp2b and in vitro expression of SOmp2b

2016
PMCID: 4742603
PMID: 26866027
DOI: 10.7774/cevr.2016.5.1.75

[…] The cleavage site of signal peptidase was between aa22-aa23. Two transmembrane segments aa3-aa28 and aa225-aa253 have been predicted by TMAP tool. The results of surface accessibility, hydrophilicity and antigenicity prediction of the Omp2b protein were summarized in . The molecular weight and the theoretical pI of the SOmp2b were 36. […]

library_books

Molecular Evolution of a Novel Family of Putative Calcium Transporters

2014
PLoS One
PMCID: 4067407
PMID: 24955841
DOI: 10.1371/journal.pone.0100851

[…] nd amongst the members of the UPF0016 subfamily. The two most conserved regions correspond to the two conserved motifs. The six putative transmembrane spans, predicted from the global alignment using TMAP , also correspond to more conserved regions, indicating that they could play an important role in the folding, stability, localization and/or activity of the proteins.When present, the central hy […]

library_books

Study on Characteristics of Chemokine CXCL10 Gene Cloned from cDNA Expression Library of Ujumqin Sheep

2013
Biomed Res Int
PMCID: 3804364
PMID: 24187661
DOI: 10.1155/2013/217942

[…] on, purification, and crystal growth, so it was difficult to determine the structure of CXCL10 protein. Transmembrane helices prediction was an important application in bioinformatics. In this study, tmap in the EMBOSS database and TMHMM 2.0 were comprehensively used in the prediction of transmembrane domain of CXCL10 protein. The result showed that high hydrophobicity occurred in the first 28 res […]

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Integrative Approach for Computationally Inferring Interactions between the Alpha and Beta Subunits of the Calcium Activated Potassium Channel (BK): a Docking Study

2013
Bioinform Biol Insights
PMCID: 3588595
PMID: 23492851
DOI: 10.4137/BBI.S10077
call_split See protocol

[…] Nine secondary-structure prediction programs were used to predict the length of each helical stretch of the subunits: DAS, ALOM2, PHDtm, TMAP, TMHMM2, TMPRED, TOPPRED2, SPLIT4, and HMMTOP2. Based on the results, a consensus prediction was calculated according to a simple majority vote type procedure. Alom2 and DAS are methods that focu […]

library_books

New old hemoglobin like proteins of symbiotic dinoflagellates

2013
Ecol Evol
PMCID: 3631397
PMID: 23610627
DOI: 10.1002/ece3.498

[…] of alignments was done using GeneDoc software (Nicholas et al. ). The prediction of transmembrane areas within the hemoglobin sequences was performed using the multiple sequence alignment and program tmap (Persson and Argos ), whereas a search for chloroplast transit peptides was done using web-based TargetP 1.1 Server: http://www.cbs.dtu.dk/services/TargetP/ (Emanuelsson et al. ). The secondary a […]


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tmap institution(s)
European Molecular Biology Laboratory, Heidelberg, Germany

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