TMBETA-GENOME statistics

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Protocols

TMBETA-GENOME specifications

Information


Unique identifier OMICS_21382
Name TMBETA-GENOME
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Maintainer


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Publication for TMBETA-GENOME

TMBETA-GENOME citations

 (3)
call_split

Prediction of structural features and application to outer membrane protein identification

2015
Sci Rep
PMCID: 4478468
PMID: 26104144
DOI: 10.1038/srep11586
call_split See protocol

[…] e available at http://genomics.fzu.edu.cn/OMP/attachments/. Six computational algorithms (i.e., SOSUI, amino acid, dipeptide, motif, SVM-based methods and a method called “New approach”) were used in TMBETA-GENOME (http://tmbeta-genome.cbrc.jp/annotation/) to annotate OMPs. Here, we assumed a protein is predicted to be OMP with high confidence if at least five computational methods of TMBETA-GENOM […]

library_books

ProBLM Web Server: Protein and Membrane Placement and Orientation Package

2014
PMCID: 4122144
PMID: 25126110
DOI: 10.1155/2014/838259

[…] used to incorporate a protein into the membrane.In parallel, databases of membrane proteins and their properties were developed such as the Orientations of Proteins in Membranes (OPM) database [] and TMBETA-GENOME database []. These developments were used to create the PPM webserver which can be used for calculating spatial positions in membranes of membrane proteins []. Furthermore, once the prot […]

library_books

Computational and experimental approaches to chart the Escherichia coli cell envelope associated proteome and interactome

2008
FEMS Microbiol Rev
PMCID: 2704936
PMID: 19054114
DOI: 10.1111/j.1574-6976.2008.00141.x

[…] TMB-Hunt results are significantly enhanced using homology information (), this option restricts the submission of single sequences at a time. TMBETADISC-RBF () and the companion precomputed database TMBETA-GENOME (, ) are other TOMP discriminators, while TMBETA-NET () couples a discriminator with a predictor of β-barrel's topology showing better performance than TMBETADISC-RBF (), but currently s […]

Citations

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TMBETA-GENOME institution(s)
Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), AIST Tokyo Waterfront Bio-IT Research Building, Tokyo, Japan; Axiohelix Pvt Limited, Tokyo, Japan

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