TMBETADISC-RBF statistics

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TMBETADISC-RBF specifications

Information


Unique identifier OMICS_07275
Name TMBETADISC-RBF
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TMBETADISC-RBF

TMBETADISC-RBF in publications

 (9)
PMCID: 5406399
PMID: 28496441
DOI: 10.3389/fimmu.2017.00463

[…] hhtop, and memsat) determined that 3,302 proteins did not contain a tmh, this was reduced to 2,929 proteins by all 4 predictors. the transmembrane β-barrel (βb) structure predictors (bomp, hhomp, tmbetadisc-rbf, and mcmbb) identified 1,085 βb-omps, 20 of which were confirmed by all 4 predictors. finally, 230 proteins were identified as lipoproteins by at least one of the predictors, 108 […]

PMCID: 5348505
PMID: 28352257
DOI: 10.3389/fmicb.2017.00396

[…] the remaining proteins classified as pses were categorized as follows: (1) ecps or periplasmic proteins predicted by signalp3.0, tat and secretomep; (2) omps predicted by bomp (berven et al., ), tmbetadisc-rbf (ou et al., ) and lipop (juncker et al., ); and (3) proteins with unknown localization. finally, based on amino acid sequences, the antigenicity value of each pse was predicted using […]

PMCID: 5015957
PMID: 27606673
DOI: 10.1371/journal.pntd.0004988

[…] [], and tmpred (http://www.ch.embnet.org/software/tmpred_form.html) were used for the prediction of transmembrane alpha-helices bomp (http://services.cbu.uib.no/tools/bomp) [] and tmbetadisc-rbf (http://rbf.bioinfo.tw/~sachen/omppredict/tmbetadisc-rbf.php) [] were used for the prediction of beta-barrel outer membrane proteins., the eggnog version 4 database (retrieved […]

PMCID: 3668253
PMID: 23506117
DOI: 10.1186/1751-0473-8-9

[…] and periplasmic ('+peri') loops or domains. this should be modified as required to suit the purpose of the user., outer membrane ß-barrel proteins are predicted using the bomp [], tmb-hunt [] and tmbetadisc-rbf [] web services. by default, high scoring sequences that are more likely to be true-positives are annotated as 'om(barrel)' and are not strictly required to have a predicted signal […]

PMCID: 3403877
PMID: 22540951
DOI: 10.1186/1471-2105-13-63

[…] of porcine strain 3480. these programs were categorized into three groups: subcellular localization predictors (pa, psortb, cello, sosui-gramn), transmembrane β-barrel protein predictors (tmb-hunt, tmbetadisc-rbf, bomp, mcmbb), and lipoprotein predictors (lipo and lipop). individual programs predicted different numbers of proteins. the use of these ten predictors in combination predicted 421 […]


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TMBETADISC-RBF institution(s)
Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan

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