TMBpro statistics

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Associated diseases

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TMBpro specifications

Information


Unique identifier OMICS_07276
Name TMBpro
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TMBpro

TMBpro in publications

 (3)
PMCID: 3723809
PMID: 23935908
DOI: 10.1371/journal.pone.0068934

[…] as loop 3 in two of the three published topology maps are too short to form this conserved structural feature., in this work, a recently developed suite of β-barrel topology prediction algorithms, tmbpro , combined with comparative homology building methods, and model refinement were used to develop a three-dimensional 16-stranded β-barrel homo-trimer model for the c. trachomatis momp protein. […]

PMCID: 3656149
PMID: 23696912
DOI: 10.1371/journal.pntd.0002222

[…] alignment program . genbank accession numbers are listed in . structural homologs were identified using the 3d jury approach . structural (3d) models for tprc, tprd and tpri were generated using the tmbpro algorithm . the orientation of the predicted loops in the tmbpro models, surface exposed vs. periplasmic, was determined as previously described by randall et al. . signal peptide predictions […]

PMCID: 3394416
PMID: 22537300
DOI: 10.1186/1471-2164-13-S2-S5

[…] discriminating tmb proteins., the folding prediction results are presented in table and figure . figure plots the matthews correlation coefficient for our approach bbp (beta-barrel predictor) and tmbpro for different proteins along the x-axis. the results of our approach are comparable to those of tmbpro but more consistent as we do not rely on training for folding. we note that, in the cases […]


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TMBpro institution(s)
School of Information and Computer Sciences, University of California, Irvine, CA, USA

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