Protocols

TMC-SNPdb specifications

Information


Unique identifier OMICS_12438
Name TMC-SNPdb
Alternative name Tata Memorial Centre-SNP database
Restrictions to use Academic or non-commercial use
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 1.0
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Amit Dutt

Publication for Tata Memorial Centre-SNP database

TMC-SNPdb citation

call_split

Drug sensitive FGFR3 mutations in lung adenocarcinoma

2016
Ann Oncol
PMCID: 5391708
PMID: 27998968
DOI: 10.1093/annonc/mdw636
call_split See protocol

[…] sing BWA-Picard-GATK/MuTect pipeline generating 3349 unique variants (, available at Annals of Oncology online). Polymorphisms overlapping with dbSNP database (v.142) and Indian specific SNP database TMC-SNPdb derived from whole exome sequencing of 62 normal samples [] were filtered (, available at Annals of Oncology online). Stringent mutation analysis was carried out as further detailed in , ava […]

TMC-SNPdb institution(s)
Advanced Centre for Treatment Research Education In Cancer (ACTREC), Tata Memorial Centre, Maharashtra, India
TMC-SNPdb funding source(s)
Wellcome Trust/DBT India Alliance (IA/I/11/2500278) DBT (BT/PR2372/AGR/36/696/2011)

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