TMDOCK statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TMDOCK
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Associated diseases

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TMDOCK specifications

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Unique identifier OMICS_21710
Name TMDOCK
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data Amino acid sequence (single-letter code) of peptide.
Input format PDB
Computer skills Basic
Stability Stable
Maintained No

Maintainer


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Publication for TMDOCK

TMDOCK citation

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Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism

2017
Sci Rep
PMCID: 5537299
PMID: 28761155
DOI: 10.1038/s41598-017-07250-4

[…] ted based on three experimental structures. Dimeric ECDs (residues 27–627) are available in PDB (3fxi). Dimeric form of TM helixes (residues 623–670) was obtained using the reported NMR structure and TMDOCK server. From the resulting set of TMDOCK-predicted dimer conformations, we chose the structure with the helix-helix interface, containing the maximal number of methyl groups that reveal the che […]


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TMDOCK institution(s)
Department of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI, USA; Department of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI, USA
TMDOCK funding source(s)
Supported by the Division of Biological Infrastructure of the National Science Foundation [Award #1145367].

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