TMHMM specifications

Unique identifier:
OMICS_03900
Restrictions to use:
None
Stability:
Stable
Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes

TMHMM specifications

Unique identifier:
OMICS_03900
Interface:
Command line interface
Input data:
A protein sequence.
Output data:
TMHMM gives some statistics and a list of the location of the predicted transmembrane helices and the predicted location of the intervening loop regions.
Programming languages:
Perl
Version:
2.0
Requirements:
decodeanhmm, gnuplot, ghostscript, ppmtogif
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

versioning

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TMHMM distribution

download

TMHMM support

Maintainer

  • Anders Krogh <>
This tool is not maintained anymore.

Additional information

Access available upon request.

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Credits

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Publications

Institution(s)

Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Stockholm Bioinformatics Center, Department of Biochemistry, Stockholm University, Stockholm, Sweden; Center for Genomics Research Karolinska Institutet, Stockholm, Sweden

Funding source(s)

This work was supported by a grant from the Danish National Research Foundation, and by grants from the Swedish Technical Sciences Research Council and the Foundation from Strategic Research.

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