Tmod statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Tmod

Tool usage distribution map

This map represents all the scientific publications referring to Tmod per scientific context
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Associated diseases


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Tmod specifications


Unique identifier OMICS_09250
Name Tmod
Alternative name Toolbox of Motif Discovery
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 1.1.1
Stability Stable
Maintained Yes


No version available


  • person_outline Hongwei Xie

Publication for Toolbox of Motif Discovery

Tmod citation


Identification of conserved drought adaptive genes using a cross species meta analysis approach

BMC Plant Biol
PMCID: 4417316
PMID: 25935420
DOI: 10.1186/s12870-015-0493-6

[…] sequences are not at adequate quality (i.e. < 800 bp or >200 N). Analysis of significantly overrepresented motifs within promoter sequences was conducted in BioProspector program [] integrated in the Tmod software []. To model the base dependencies of each species, the second-order Markov background models were constructed based on a random sample of 100 and 150 promoters, which are equivalent to […]

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Tmod institution(s)
Department of Automatic Control, College of Mechatronics and Automation, National University of Defense Technology, Changsha, Hunan, China; Department of Statistics, Harvard University, Cambridge, MA, USA

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