Tmod statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

Tmod specifications


Unique identifier OMICS_09250
Name Tmod
Alternative name Toolbox of Motif Discovery
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 1.1.1
Stability Stable
Maintained Yes


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  • person_outline Hongwei Xie <>

Publication for Toolbox of Motif Discovery

Tmod in publication

PMCID: 4417316
PMID: 25935420
DOI: 10.1186/s12870-015-0493-6

[…] are not at adequate quality (i.e. < 800 bp or >200 n). analysis of significantly overrepresented motifs within promoter sequences was conducted in bioprospector program [] integrated in the tmod software []. to model the base dependencies of each species, the second-order markov background models were constructed based on a random sample of 100 and 150 promoters, which are equivalent […]

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Tmod institution(s)
Department of Automatic Control, College of Mechatronics and Automation, National University of Defense Technology, Changsha, Hunan, China; Department of Statistics, Harvard University, Cambridge, MA, USA

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