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TMPL specifications

Information


Unique identifier OMICS_20715
Name TMPL
Alternative name Transmembrane protein Models Positioned in the Lipid
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Maintainer


  • person_outline Guillaume Postic

Publication for Transmembrane protein Models Positioned in the Lipid

TMPL citations

 (7)
library_books

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

2016
PLoS One
PMCID: 4816451
PMID: 27031952
DOI: 10.1371/journal.pone.0152548

[…] es from previously characterised fungal genes involved in ROS. Seven R. solani ROS-related homologous genes were identified from the coding regions of the R. solani genome []; noxA, noxB, noxC, noxD, TmpL, SOD and OAH. shows the relative expression of each R. solani gene following infection in wheat using RT-qPCR. The four nox homologous genes did not show any change in expression and the SOD-hom […]

library_books

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

2015
eLife
PMCID: 4533152
PMID: 26200428
DOI: 10.7554/eLife.08490.023

[…] o that we considered the origin of these small contigs as ‘undetermined’, since they may come from integrated prophages or extrachromosomal genomes.All scripts used in this study are available on the TMPL wiki as a zip package: http://tmpl.arizona.edu/dokuwiki/doku.php?id=bioinformatics:scripts:vsb and on github: http://github.com/simroux/virsorter-curated-dataset-scripts-package. […]

library_books

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single cell and meta genomics

2014
eLife
PMCID: 4164917
PMID: 25171894
DOI: 10.7554/eLife.03125.030

[…] and relative abundance distributions were generated with the ggplot2 module of R software (). The perl scripts used in the different part of the bioinformatics analyses are available online at http://tmpl.arizona.edu/dokuwiki/doku.php?id=bioinformatics:scripts:sup05 and as . […]

library_books

SOD2 gene Val16Ala polymorphism is associated with macroalbuminuria in Mexican Type 2 Diabetes patients: a comparative study and meta analysis

2013
BMC Med Genet
PMCID: 3853578
PMID: 24119114
DOI: 10.1186/1471-2350-14-110

[…] e frequencies observed in the HapMap Mexican American sample from Los Angeles, California (32.9% vs. 36.0%) (http://hapmap.ncbi.nlm.nih.gov/cgi-perl/snp_details_phase3?name=rs4880&source=hapmap28_B36&tmpl=snp_details_phase3). However, the data available for other population groups indicate that there is substantial dispersion of allele frequencies for this polymorphism. For example, in populations […]

library_books

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

2013
PLoS One
PMCID: 3585363
PMID: 23468974
DOI: 10.1371/journal.pone.0057355

[…] rta.ca/jbrzusto/rarefact.php).All protocols are available at http://eebweb.arizona.edu/Faculty/mbsulli/protocols.htm, and scripts and associated documentation are archived at http://code.google.com/p/tmpl/. […]

call_split

Polymorphisms in the RNASE3 Gene Are Associated with Susceptibility to Cerebral Malaria in Ghanaian Children

2011
PLoS One
PMCID: 3246477
PMID: 22216286
DOI: 10.1371/journal.pone.0029465
call_split See protocol

[…] Beijing, China and JPT: Japanese in Tokyo, Japan obtained from the International HapMap Project database (http://hapmap.ncbi.nlm.nih.gov/cgi-perl/snp_details_phase3?name=rs2073342&source=hapmap28_B36&tmpl=snp_details_phase3). Pairwise FST distances were calculated for all 6 populations using the POPTREE2 software . […]

Citations

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TMPL institution(s)
Inserm U1134, Paris, France; Université Paris Diderot, Sorbonne Paris Cité, UMR_S 1134, Paris, France; Institut National de la Transfusion Sanguine, Paris, France; Laboratory of Excellence GREx, Paris, France

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