TMpred specifications

Information


Unique identifier OMICS_03883
Name TMpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Kay Hofmann <>

TMpred article

TMpred citations

 (7)
2018
PMCID: 5915565

[…] also a research fellow of cnpq., we thank dr. ken cline for providing laboratory facilities and critically reading the manuscript., http://www.arabidopsis.org , http://www.ch.embnet.org/software/tmpred_form.html , https://www.arabidopsis.org/portals/expression/microarray/atgenexpress.jsp , http://www.ncbi.nlm.nih.gov/genbank , http://www.phytozome.net/ , http://translatorx.co.uk/ , […]

2017
PMCID: 5408280

[…] the nonredundant protein database at the national center for biotechnology information (ncbi). the transmembrane domains were predicted using the tmpred program (http://www.ch.embnet.org/software/tmpred_form.html)., amino acid sequences of nhe or nhe‐like isoforms from other animals were obtained from genbank or uniprotkb/trembl (supporting information table s1). the sequences were aligned […]

2016
PMCID: 4889606

[…] promoter was sequenced and submitted to ncbi (accession number kp229524). see table s1 for primer sequences., the ncbi database was used as a search engine for nucleotide and protein sequences. tmpred online software was used for the prediction of transmembrane domains and clustalw software was used for sequence alignment. conserved domains of sbslsp were determined by blastp programme […]

2013
PMCID: 3685534

[…] other fad-like hydroxylases and epoxidases. the presence of the typical functional elements of fad-like enzymes was analyzed using bioinformatics tools: six transmembrane domains were identified by tmpred (data not shown) and three his motifs were identified by a sequence alignment of proteins with characterized fad-like enzymes (additional file 15: figure s7). protcomp predicted […]

2012
PMCID: 3473018

[…] is briefly described in the table s1., the multiple alignments of sting sequences were generated using the software alignx from vectornti advance 11 (invitrogen) and the tm predictions using the tmpred server (http://www.ch.embnet.org/software/tmpred_form.html). the neighbor-joining (nj) phylogenetic tree of sting was calculated by mega5 software [51] based on a multiple alignment (using […]

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