tmRDB specifications


Unique identifier OMICS_05587
Name tmRDB
Restrictions to use None
Maintained Yes


  • person_outline Christian Zwieb

Publication for tmRDB

tmRDB citations


Comparative Genomic Analysis Shows That Avian Pathogenic Escherichia coli Isolate IMT5155 (O2:K1:H5; ST Complex 95, ST140) Shares Close Relationship with ST95 APEC O1:K1 and Human ExPEC O18:K1 Strains

PLoS One
PMCID: 4232414
PMID: 25397580
DOI: 10.1371/journal.pone.0112048

[…] RNAmmer (, tRNA genes tRNAscan-SE Search Server (, and tmRNA were annotated by tmRNA Database ( with default parameters. […]


Comparative 3 D Modeling of tmRNA

BMC Mol Biol
PMCID: 1168896
PMID: 15958166
DOI: 10.1186/1471-2199-6-14

[…] hen the phylogenetic order could not be determined, the sequence was placed next to the closest relative as determined by the ClustalW plug-in of BioEdit [,]. The sequences were made available at the tmRDB [].Aligning was done manually using BioEdit [] with details described previously []. Briefly, closely related sequences were aligned first. Then, invariant positions were used as guides to align […]

tmRDB institution(s)
Department of Molecular Biology, The University of Texas Health Science Center at Tyler, Tyler, TX, USA

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