tmVar pipeline

tmVar specifications


Unique identifier OMICS_04860
Name tmVar
Alternative name tmVar 2.0
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Zhiyong Lu <>

Publications for tmVar

tmVar citation

PMCID: 5082890

[…] [34]. pdfx is a rule-based system designed to reconstruct the logical structure of scholarly articles in pdf form, regardless of their formatting style. 2) next, it obtains genetic variants with tmvar [35] from an extracted full-text file. tmvar is a text-mining tool based on a conditional random field for extracting a wide range of sequence variants described at protein, dna and rna levels. […]

tmVar institution(s)
National Center for Biotechnology Information (NCBI), National Library of Medecine (NLM), Bethesda, MD, USA
tmVar funding source(s)
NIH Intramural Research Program, National Library of Medicine; NLM Associate Fellowship Program sponsored by the National Library of Medicine and administered by the Oak Ridge Institute for Science and Education

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