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tnet specifications

Information


Unique identifier OMICS_16864
Name tnet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Other
Computer skills Advanced
Version 3.0.14
Stability Stable
Requirements
survival, igraph, R(≥2.13.0)
Source code URL https://cran.r-project.org/src/contrib/tnet_3.0.14.tar.gz
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Tore Opsahl

tnet citations

 (3)
library_books

Implications of the cattle trade network in Cameroon for regional disease prevention and control

2017
Sci Rep
PMCID: 5339720
PMID: 28266589
DOI: 10.1038/srep43932

[…] ith approaches targeting markets belonging to the top 10th percentiles of each centrality measure. All analysis and graphics were performed in R statistical software (version 3.2.3) using the igraph, tnet, fitdistrplus, glm, raster, rgdal, circlize and ggplot2 packages. […]

library_books

Let 7i 5p represses brite adipocyte function in mice and humans

2016
Sci Rep
PMCID: 4921928
PMID: 27345691
DOI: 10.1038/srep28613

[…] Cells were lysed in TNET lysis buffer (25 mM Tris-Cl (pH 7.4), 100 mM NaCl, 1mM EDTA, 1% Triton X-100, 0.5% Nonidet P40, 1× protease inhibitor cocktail and 1× Phosphostop mix (Roche Diagnostics, Meylan, France)). The pro […]

library_books

Modularized Evolution in Archaeal Methanogens Phylogenetic Forest

2014
Genome Biol Evol
PMCID: 4986457
PMID: 25502908
DOI: 10.1093/gbe/evu259

[…] raph.sourceforge.net/) in R was adopted to implement the community identification based on random walks. Function of “modularity” in igraph was used to evaluate the community structure in the network.Tnet (), igraph and in-house Perl and R scripts were used for the weighted network analysis. Best fit degree distribution (ML estimation) was implemented using MASS package (), and in-house R scripts. […]


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