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TNT specifications

Information


Unique identifier OMICS_04242
Name TNT
Alternative name Tree analysis using New Technology
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Tree analysis using New Technology

TNT citations

 (37)
library_books

A new archaic baleen whale Toipahautea waitaki (early Late Oligocene, New Zealand) and the origins of crown Mysticeti

2018
R Soc Open Sci
PMCID: 5936954
PMID: 29765689
DOI: 10.1098/rsos.172453

[…] 000000000000000000??000??00000011??0000000110111?0?1???3?????0?????1???????0?00??????????1000????????????????Cladistic analyses were performed with heuristic analyses under the traditional search in ‘Tree analysis using New Technology’ (TNT v. 1.1 []). Settings for analyses are 10 000 maximum trees in the Memory option; 10 000 random stepwise-addition replicates; tree bisection reconnection branch […]

library_books

Early Cambrian fuxianhuiids from China reveal origin of the gnathobasic protopodite in euarthropods

2018
Nat Commun
PMCID: 5794847
PMID: 29391458
DOI: 10.1038/s41467-017-02754-z

[…] The dataset (Supplementary Notes  and ), consisting of 43 taxa and 84 characters, was analyzed using the freely available phylogenetic software TNT (tree analysis using new technology) v.1.1. Analyses were performed using New Technology Search with Parsimony Ratchet, Sectorial Searches, Tree Drifting, and Tree Fusing, set to find the shortest tree […]

library_books

Genome based classification of micromonosporae with a focus on their biotechnological and ecological potential

2018
Sci Rep
PMCID: 5765111
PMID: 29323202
DOI: 10.1038/s41598-017-17392-0

[…] tree reduced to the Micromonospora clade were permuted 10,000 times (including the original arrangement) and maximum-parsimony scores of the selected characters and each of the trees determined with Tree analysis using New Technology (TNT). The number of times the score of a permuted tree was as low or lower than the score of the original tree yielded the p-value. More sophisticated tests are ava […]

library_books

High diversity of the Ganzhou Oviraptorid Fauna increased by a new “cassowary like” crested species

2017
Sci Rep
PMCID: 5532250
PMID: 28751667
DOI: 10.1038/s41598-017-05016-6

[…] ition of Corythoraptor into the modified data matrix, 45 taxa (Herrerasaurus, Velociraptor and Archaeopteryx as outgroups; 42 taxa as ingroups) and 257 osteological characters was analyzed using TNT (Tree Analysis Using New Technology) version 1.1 (Willi Hennig Society Edition). A traditional search (tree bisection-reconnection swapping algorithm, 1,000 random seeds, 1,000 replicates, 10 trees sav […]

library_books

Fossil climbing perch and associated plant megafossils indicate a warm and wet central Tibet during the late Oligocene

2017
Sci Rep
PMCID: 5429824
PMID: 28408764
DOI: 10.1038/s41598-017-00928-9

[…] he relationships based on Rüber et al.’s gene matrix of the extant taxa involved in this study used as backbone (datamatix: Wu et al. 2016 backboned.tnt). Parsimony analysis was undertaken using TNT, Tree analysis using New Technology, a parsimony analysis program supported by the Willi Hennig Society. The analyses were conducted using a traditional search strategy, with default settings except fo […]

library_books

Phylogeny and historical biogeography of leafhopper subfamily Evacanthinae (Hemiptera: Cicadellidae) based on morphological and molecular data

2017
Sci Rep
PMCID: 5377372
PMID: 28368039
DOI: 10.1038/srep45387

[…] urn in’. Convergence of the Markov Chain and assessment of ‘burn in’ samples were determined using Tracer v1.4. The morphological data were analysed under parsimony with the computer program TNT 1.5 (tree analysis using new technology) using a traditional search with 1000 replicates of random addition sequence followed by TBR (tree bisection and reconnection) branch swapping. Bremer supports using […]

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