TogoWS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TogoWS
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Tool usage distribution map

This map represents all the scientific publications referring to TogoWS per scientific context
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Protocols

TogoWS specifications

Information


Unique identifier OMICS_03842
Name TogoWS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Publication for TogoWS

TogoWS citations

 (9)
library_books

BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services

2015
BMC Res Notes
PMCID: 4467627
PMID: 26032494
DOI: 10.1186/s13104-015-1190-0

[…] ], Kyoto Encyclopedia of Genes and Genomes (KEGG) API service [] and the DNA Data Bank of Japan (DDBJ) web API for bioinformatics []. A comprehensive collection of web services has been integrated in TogoWS SOAP and REST APIs []. Also, many other services can be found in BioCatalogue []. Different methods can be incorporated together with workflow engines such as Taverna [], Kepler [], or Galaxy [ […]

library_books

SPARQL enabled identifier conversion with Identifiers.org

2015
Bioinformatics
PMCID: 4443684
PMID: 25638809
DOI: 10.1093/bioinformatics/btv064

[…] ublic biological databases and datasets from legacy formats into RDF, and provides a mechanism to explore these as Linked Data. Recently, established bioinformatic organizations such as DBCLS (http://togows.dbcls.jp/), NCBI (https://pubchem.ncbi.nlm.nih.gov/rdf/), neXtProt () and the EMBL-EBI in collaboration with the UniProt consortium () have made some datasets available in RDF, thereby signific […]

library_books

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

2013
J Biomed Semantics
PMCID: 3598643
PMID: 23398680
DOI: 10.1186/2041-1480-4-6

[…] ol And RDF Query Language; SADI: Semantic Automated Discovery and Integration; SBML: Systems Biology Markup Language; SIO: Semanticscience Integrated Ontology; TDWG: Taxonomic Database Working Group; TogoWS: Togo Web service; TogoDB: Togo Database; URIs: Uniform Resource Identifiers; W3C: World Wide Web Consortium; WSDL: Web Services Description Language; XML: Extensible Markup Language; XSL: XML […]

library_books

The Semantic Automated Discovery and Integration (SADI) Web service Design Pattern, API and Reference Implementation

2011
J Biomed Semantics
PMCID: 3212890
PMID: 22024447
DOI: 10.1186/2041-1480-2-8

[…] nvelope such as intermediaries and message paths. Other than caBIO, almost all bioinformatics Web interfaces are straightforward, single-operation request/response. For example, the SOAP interface of TogoWS [] provides a KeggGetEnzymesByPathway function that consumes a KEGG pathway identifier and responds with a list of related Enzymes. For these kinds of services, the overhead of SOAP is (demonst […]

call_split

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

2011
J Biomed Semantics
PMCID: 3170566
PMID: 21806842
DOI: 10.1186/2041-1480-2-4
call_split See protocol

[…] the remote Ensembl [] database. Finally, finished annotations can be published as a simple database using TogoDB and the result can be integrated into workflow managers like jORCA or Taverna through (TogoWS) Web services. Figure shows the steps of this workflow. […]

library_books

Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV

2011
Brief Bioinform
PMCID: 3294242
PMID: 21803786
DOI: 10.1093/bib/bbr039

[…] nd on YouTube. Although most of the contents are described in Japanese, there are 19 original programs in English, most of which explain a service developed in the Integrated Database Project such as TogoWS [], which provides an integrated SOAP and REST APIs for interoperable bioinformatics Web services and OReFiL [], which is an online resource finder for life science. We plan to expand our own E […]


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TogoWS institution(s)
Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan

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