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TogoWS specifications

Information


Unique identifier OMICS_03842
Name TogoWS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for TogoWS

TogoWS in publications

 (5)
PMCID: 5688710
PMID: 29141580
DOI: 10.1186/s12859-017-1870-y

[…] available from the illumina website (http://support.illumina.com/array/array_kits/infinium-methylationepic-beadchip-kit/downloads.html). target site sequence context was retrieved via http://togows.org/api/ucsc/mm10/targetsite_genomiccoordinates.fasta., the infinium human methylationepic beadchip (illumina) platform was used for dna methylation profiling. samples were randomized on 2 […]

PMCID: 4467627
PMID: 26032494
DOI: 10.1186/s13104-015-1190-0

[…] kyoto encyclopedia of genes and genomes (kegg) api service [] and the dna data bank of japan (ddbj) web api for bioinformatics []. a comprehensive collection of web services has been integrated in togows soap and rest apis []. also, many other services can be found in biocatalogue []. different methods can be incorporated together with workflow engines such as taverna [], kepler [], or galaxy […]

PMCID: 4443684
PMID: 25638809
DOI: 10.1093/bioinformatics/btv064

[…] biological databases and datasets from legacy formats into rdf, and provides a mechanism to explore these as linked data. recently, established bioinformatic organizations such as dbcls (http://togows.dbcls.jp/), ncbi (https://pubchem.ncbi.nlm.nih.gov/rdf/), nextprot () and the embl-ebi in collaboration with the uniprot consortium () have made some datasets available in rdf, thereby […]

PMCID: 3212890
PMID: 22024447
DOI: 10.1186/2041-1480-2-8

[…] such as intermediaries and message paths. other than cabio, almost all bioinformatics web interfaces are straightforward, single-operation request/response. for example, the soap interface of togows [] provides a kegggetenzymesbypathway function that consumes a kegg pathway identifier and responds with a list of related enzymes. for these kinds of services, the overhead of soap […]

PMCID: 2703950
PMID: 19417067
DOI: 10.1093/nar/gkp300

[…] institutions that adopt rest technology in addition to soap such as ncbi entrez programming utilities (http://www.ncbi.nlm.nih.gov/), ebi (http://www.ebi.ac.uk/), pdbj (http://doc.pdbj.org/), dbcls togows (http://togows.dbcls.jp/) and g-language (http://www.g-language.org/). a rest server has many advantages over a soap server as follows: (i) easy to use, (ii) can be used in various ways […]

TogoWS institution(s)
Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan

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