TogoWS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TogoWS

Tool usage distribution map

This map represents all the scientific publications referring to TogoWS per scientific context
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TogoWS specifications


Unique identifier OMICS_03842
Name TogoWS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes


No version available

Publication for TogoWS

TogoWS citations


BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services

BMC Res Notes
PMCID: 4467627
PMID: 26032494
DOI: 10.1186/s13104-015-1190-0

[…] ], Kyoto Encyclopedia of Genes and Genomes (KEGG) API service [] and the DNA Data Bank of Japan (DDBJ) web API for bioinformatics []. A comprehensive collection of web services has been integrated in TogoWS SOAP and REST APIs []. Also, many other services can be found in BioCatalogue []. Different methods can be incorporated together with workflow engines such as Taverna [], Kepler [], or Galaxy [ […]


SPARQL enabled identifier conversion with

PMCID: 4443684
PMID: 25638809
DOI: 10.1093/bioinformatics/btv064

[…] ublic biological databases and datasets from legacy formats into RDF, and provides a mechanism to explore these as Linked Data. Recently, established bioinformatic organizations such as DBCLS (, NCBI (, neXtProt () and the EMBL-EBI in collaboration with the UniProt consortium () have made some datasets available in RDF, thereby signific […]


The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

J Biomed Semantics
PMCID: 3598643
PMID: 23398680
DOI: 10.1186/2041-1480-4-6

[…] ol And RDF Query Language; SADI: Semantic Automated Discovery and Integration; SBML: Systems Biology Markup Language; SIO: Semanticscience Integrated Ontology; TDWG: Taxonomic Database Working Group; TogoWS: Togo Web service; TogoDB: Togo Database; URIs: Uniform Resource Identifiers; W3C: World Wide Web Consortium; WSDL: Web Services Description Language; XML: Extensible Markup Language; XSL: XML […]


The Semantic Automated Discovery and Integration (SADI) Web service Design Pattern, API and Reference Implementation

J Biomed Semantics
PMCID: 3212890
PMID: 22024447
DOI: 10.1186/2041-1480-2-8

[…] nvelope such as intermediaries and message paths. Other than caBIO, almost all bioinformatics Web interfaces are straightforward, single-operation request/response. For example, the SOAP interface of TogoWS [] provides a KeggGetEnzymesByPathway function that consumes a KEGG pathway identifier and responds with a list of related Enzymes. For these kinds of services, the overhead of SOAP is (demonst […]


The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

J Biomed Semantics
PMCID: 3170566
PMID: 21806842
DOI: 10.1186/2041-1480-2-4
call_split See protocol

[…] the remote Ensembl [] database. Finally, finished annotations can be published as a simple database using TogoDB and the result can be integrated into workflow managers like jORCA or Taverna through (TogoWS) Web services. Figure shows the steps of this workflow. […]


Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV

Brief Bioinform
PMCID: 3294242
PMID: 21803786
DOI: 10.1093/bib/bbr039

[…] nd on YouTube. Although most of the contents are described in Japanese, there are 19 original programs in English, most of which explain a service developed in the Integrated Database Project such as TogoWS [], which provides an integrated SOAP and REST APIs for interoperable bioinformatics Web services and OReFiL [], which is an online resource finder for life science. We plan to expand our own E […]

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TogoWS institution(s)
Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan

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