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A platform that gathers currently more than 160 methods for broadly defined miRNA analysis. The collected tools are classified into several general and more detailed categories in which the users can additionally filter the available methods according to their specific research needs, capabilities and preferences. Tools4miRs is also a web-based target prediction meta-server that incorporates user-designated target prediction methods into the analysis of user-provided data. Tools4miRs is useful not only for bioinformaticians but also for experimental scientists in basic or applied miRNA research.

Software type:
Consensus tool
Interface:
Web user interface
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Basic
Version:
1.1
Stability:
Stable
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Institution(s)

Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Department of Plant Molecular Biology, Institute of Experimental Plant Biology and Biotechnology, University of Warsaw, Warsaw, Poland

Funding source(s)

This work was supported by the European Union from the European Social Fund under the Operational Programme Human Capital [POKL.04.03.00-00-060/12].

  • (Alexiou et al., 2009) Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics.
    PMID: 19789267
  • (Ding et al., 2012) Finding microRNA targets in plants: current status and perspectives. Genomics, proteomics & bioinformatics.
    PMID: 23200136
  • (Majoros et al., 2013) MicroRNA target site identification by integrating sequence and binding information. Nature methods.
    PMID: 23708386
  • (Mendes et al., 2009) Current tools for the identification of miRNA genes and their targets. Nucleic acids research.
    PMID: 19295136
  • (Akhtar et al., 2016) Bioinformatic tools for microRNA dissection. Nucleic acids research.
    PMID: 26578605

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