TopPIC specifications

Unique identifier:
OMICS_10534
Software type:
Toolkit/Suite
Restrictions to use:
None
Output data:
TopPIC outputs a tab delimited text file and a collection of html files for identified proteoforms.
Programming languages:
C++
Version:
1.0.0
Maintained:
Yes
Name:
TOP-Down Mass Spectrometry Based Proteoform Identification and Characterization
Interface:
Command line interface
Input data:
The input of TopPIC consists of a protein database file in the FASTA format and a spectral data file in the msalign format, which is similar to the MGF file format.
Operating system:
Unix/Linux, Windows
Computer skills:
Advanced
Stability:
Stable

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TopPIC support

Documentation

Maintainer

  • Xiaowen Liu <>

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Publications

Institution(s)

Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA

Funding source(s)

The research was partially supported by the National Institute of General Medical Sciences, National Institutes of Health (NIH) through Grant R01GM118470.

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