Tspair specifications

Unique identifier:
OMICS_12484
Software type:
Package/Module
Restrictions to use:
None
Output data:
A tsp object which gives the TSP score, indices, gene expression data and group labels for the TSP. If there are multiple pairs that achieve the top score, then the tie-breaking score developed by Tan et al. (2005) is reported.
License:
GNU General Public License version 2.0
Version:
1.30.0
Requirements:
R, Biobase
Name:
Top Scoring Pairs
Interface:
Command line interface
Input data:
Either (i) a gene expression matrix or an expression set and a group indicator vector, or (ii) an expression set object and a column number, indicating which column of the annotation data to use as the group indicator.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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Tspair distribution

download

Tspair support

Documentation

Maintainer

  • Jeffrey T. Leek <>

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Publications

Institution(s)

Department of Oncology, Johns Hopkins School of Medicine, Baltimore, MD, USA

Funding source(s)

National Science Foundation (DMS034211); National Institutes of Health (1UL1RR025005-01).

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