TOPAZ statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TOPAZ
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Tool usage distribution map

This map represents all the scientific publications referring to TOPAZ per scientific context
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Associated diseases

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Popular tool citations

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TOPAZ specifications

Information


Unique identifier OMICS_31274
Name TOPAZ
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
TCMalloc
Maintained Yes

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Versioning


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Maintainer


  • person_outline Alan Medlar

Publication for TOPAZ

TOPAZ citation

library_books

Characterization of a P1 like bacteriophage carrying CTX M 27 in Salmonella spp. resistant to third generation cephalosporins isolated from pork in China

2017
Sci Rep
PMCID: 5241659
PMID: 28098241
DOI: 10.1038/srep40710

[…] ith the Qiagen Plasmid Midi Kit (Qiagen, Germany) and was sequenced by the Roche 454 Genome Sequencer FLX system. Sequence reads were assembled by SOAP denovo software. The GeneMarKS software (http://topaz.gatech.edu/) was used to identify putative open reading frames. The nucleotide and amino acid sequences were analyzed and compared through BLAST queries against the GenBank database. […]


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TOPAZ institution(s)
Institute of Biotechnology, University of Helsinki, Helsinki, Finland
TOPAZ funding source(s)
Supported by the Academy of Finland (grant number 292589).

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