TOPCONS pipeline

TOPCONS specifications

Information


Unique identifier OMICS_07262
Name TOPCONS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Arne Elofsson <>

Information


Unique identifier OMICS_07262
Name TOPCONS
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Arne Elofsson <>

Publications for TOPCONS

TOPCONS IN pipeline

2016
PMCID: 4706698
PMID: 26746870
DOI: 10.1186/s13104-015-1794-4

[…] we obtained against the draft d. v. virgifera genome sequences (hugh m. robertson, personal communication) using tblastn similarity search. prediction of membrane protein topology was achieved using topcons [21]., multiple alignments of co2 receptor protein sequences were generated using mafft (ver. 7.215) with the l-ins-i algorithm [22]. the maximum-likelihood phylogenetic tree […]

TOPCONS institution(s)
Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden; Science for Life Laboratory, Stockholm University, Solna, Sweden; Bioinformatics Infrastructure for Life Sciences (BILS), Stockholm University, Sweden

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