TopHat-Fusion specifications

Information


Unique identifier OMICS_01359
Name TopHat-Fusion
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Daehwan Kim <>

TopHat-Fusion article

TopHat-Fusion citations

 (2)
2018
PMCID: 5930968

[…] rna sample preparation v2 guide, illumina company ltd)., htseq software was used to count the reads numbers mapped to each circrna. rpm (reads per million mapped reads, including tophat mapping and tophat-fusion mapping) [1] was employed to calculate the expression level of individual circrna. differential expression between circrnas was assessed by degseq algorithm. we defined the statistical […]

2017
PMCID: 5707054

[…] performed. firstly, tophat was used to perform the multiple mapping to the sequence reads of all the samples. then unmapped reads were screened and mapped to reference genome (grchr37/hg19) using tophat-fusion [49]. these reads were separated and mapped onto the relevant reference genome while non-linear candidate positions were considered possible back-splice junction reads. next […]

TopHat-Fusion institution(s)
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
TopHat-Fusion funding source(s)
Supported in part by NIH grants R01- LM006845 and R01-HG006102.

TopHat-Fusion reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TopHat-Fusion