TopHat-Recondition specifications
- Unique identifier:
- OMICS_12031
- Interface:
- Command line interface
- Output data:
- BAM file
- Programming languages:
- Python
- Computer skills:
- Advanced
- Requirements:
- PySam
- Software type:
- Package/Module
- Restrictions to use:
- None
- Operating system:
- Unix/Linux, Mac OS, Windows
- License:
- BSD 2-clause “Simplified” License
- Stability:
- Stable
- Maintained:
- Yes
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TopHat-Recondition distribution
download
TopHat-Recondition support
Documentation
Maintainer
- Lao H. Saal <>
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Publications
-
(Brueffer and Saal, 2016)
TopHat-Recondition: a post-processor for TopHat unmapped reads.
BMC Bioinformatics.
PMID: 27142976 DOI: 10.1186/s12859-016-1058-x
Institution(s)
Division of Oncology and Pathology, Department of Clinical Sciences, Lund University Cancer Center, Lund University, Lund, Sweden
Funding source(s)
This work was supported by the Swedish Cancer Society, Swedish Research Council, Governmental Funding of Clinical Research within National Health Service, and Mrs. Berta Kamprad Foundation.
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