TopKLists statistics

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TopKLists specifications

Information


Unique identifier OMICS_12773
Name TopKLists
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License GNU Lesser General Public License version 3.0
Computer skills Medium
Version 1.0.6
Stability Stable
Requirements
RGtk2, GTK+, R
Maintained Yes

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Maintainer


  • person_outline Michael G. Schimek <>

Publication for TopKLists

TopKLists in publication

PMCID: 5687331
PMID: 28426276
DOI: 10.1080/15592294.2017.1319043

[…] due to quality issues in different cancers, those missing probes were kept as missing on the common list. posteriorly, the cancer ranked lists were merged and a global rank was calculated using the topklists r package. the k top ranked cpg sites (those in which the slope was less steep) were analyzed using the moderate-deviation-based inference for random degeneration in paired rank lists, […]


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TopKLists institution(s)
Statistical Bioinformatics, Medical University of Graz, Graz, Austria; Bioinformatics in Translational Research, Masaryk University, Brno, Czech Republic; Institute for Bioinformatics and Systems Biology, Helmholtz Centre Munich, Munich, Germany; Statistical Bioinformatics, Medical University of Graz, Graz, Austria; Stanford Cancer Institute, Stanford University, Stanford, CA, USA; Department of Statistics, The Ohio State University, Columbus, OH, USA
TopKLists funding source(s)
This project was supported by the Medical University of Graz (MGS) as well as funding by the Deutsche Forschungsgemeinschaft and by the US National Science Foundation grant DMS-1220772.

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