TopMatch specifications

Information


Unique identifier OMICS_03665
Name TopMatch
Interface Web user interface
Restrictions to use None
Input data The atomic coordinates of two protein structures.
Input format PDB, SCOP, CATH, COPS
Output data The 3D structures of the superimposed input proteins, the sequence alignment that results from a selected structure alignment and a table of alternative alignments.
Computer skills Basic
Stability Stable
Requirements Java
Maintained Yes

Documentation


Maintainer


  • person_outline Manfred J. Sipp <>

Additional information


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Information


Unique identifier OMICS_03665
Name TopMatch
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Manfred J. Sipp <>

Additional information


A registration is needed to access to tools.

TopMatch article

TopMatch citation

2011
PMCID: 3143709

[…] pymol (delano scientific, san carlos, ca) was used to generate graphic images. the root-mean-square deviation between the mutant and wild-type hepd was calculated via structural comparison using topmatch.14,15, previously proposed mechanisms for the conversion of 2-hep to hmp and formate do not provide a satisfactory explanation for racemization both at c1 in the conversion of 2-hep […]

TopMatch institution(s)
Division of Bioinformatics, Department of Molecular Biology, University of Salzburg, Salzburg, Austria
TopMatch funding source(s)
Supported by FWF Austria, grant number P21294-B12.

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