TOPD/FMTS specifications

Information


Unique identifier OMICS_13096
Name TOPD/FMTS
Alternative name TOPological Distance/From Multiple To Single
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Medium
Version 3.3
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Pere Puigbo <>

TOPD/FMTS article

TOPD/FMTS citation

2018
PMCID: 5937832

[…] which gene or set of genes represents most closely the pan-genome-phylogenetic tree of l. delbrueckii, the tree of each core gene was compared to the tree of the pan genome of l. delbrueckii using topd/fmts [36] and clc workbench 8 (clc genomic, aarhus, denmark). each homologous gene set from the core genome was imported as multi-entry fasta into clc genomic workbench 8. the genes were aligned […]

TOPD/FMTS institution(s)
Evolutionary Genomics Group, Biochemistry and Biotechnology Department, Rovira i Virgili University, Tarragona, Spain; Bioinformatics Laboratory, National University of Ireland, Maynooth, Ireland
TOPD/FMTS funding source(s)
This work has been financed by the project BIO2003-07672 from the Ministerio de Ciencia y TecnologĂ­a of the Spanish Government.

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