TADtool specifications

Unique identifier:
OMICS_13239
Software type:
Package/Module
Restrictions to use:
None
Input format:
NPY, BED3
Operating system:
Unix/Linux, Mac OS
License:
MIT License
Stability:
Stable
Maintained:
Yes
Name:
Topologically Associating Domains tool
Interface:
Command line interface
Input data:
Square Hi-C Matrix, number of regions into Hi-C, region of the Hi-C matrix to display in plot
Output data:
Hi-C plot with bars indicating the currently called TADs, a line plot with the insulation or directionality index at the current window size, a heatmap with the insulation or directionality index for all specified window sizes
Programming languages:
Python
Computer skills:
Advanced
Source code URL:
https://codeload.github.com/vaquerizaslab/tadtool/zip/master

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TADtool support

Documentation

Maintainer

  • Kai Kruse <>

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Publications

Institution(s)

Max Planck Institute for Molecular Biomedicine, Münster, Germany

Funding source(s)

EpiGeneSys NoE; ZENCODE-ITN; Deutsche Forschungsgemeinschaft Cells-in-Motion Cluster of Excellence (EXC 1003–CiM); University of Münster and the Max Planck Society; Fellowship from the graduate school International Max Planck Research School–Molecular Biomedicine, Münster, Germany; European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 643062

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