Toppar specifications

Information


Unique identifier OMICS_25844
Name Toppar
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Registration required Yes
Maintained Yes

Documentation


Maintainer


  • person_outline Thorhildur Juliusdottir

Additional information


http://mccarthy.well.ox.ac.uk/toppar/docs/index.html

Publication for Toppar

Toppar citation

library_books

Three dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2

2015
BMC Struct Biol
PMCID: 4599027
PMID: 26449279
DOI: 10.1186/s12900-015-0046-0

[…] h the Gromacs 4.0.5, 4.6.5, 5.0.1 and 5.0.2 software [] and CHARMM27 force field []. We modified the charmm27.ff force field [] files in Gromacs to add topology and parameter information for ATP from toppar_all36_na_nad_ppi.str by following the procedure specified in the Gromacs manual (http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field). Proteins and ligands were solva […]

Toppar institution(s)
Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK; Novo Nordisk Center for Protein Research,University of Copenhagen, Copenhagen, Denmark; UCL Genetics Institute, University College London, London, UK; Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Churchill Hospital, Oxford, UK; Oxford University Hospitals Trust, Oxford NIHR Biomedical Research Centre, Churchill Hospital, Oxford, UK
Toppar funding source(s)
Supported by the Wellcome Trust awards [090532 and 098381] and the JDRF [2-SRA-2014-276-Q-R].

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