ToppFun pipeline

ToppFun specifications


Unique identifier OMICS_27567
Name ToppFun
Interface Web user interface
Restrictions to use None
Input data A single gene list.
Output format HTML+TSV
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Bruce Aronow <>
  • person_outline Anil Jegga <>
  • person_outline Eric Bardes <>

Publication for ToppFun

ToppFun IN pipeline

PMCID: 5133834
PMID: 27827897
DOI: 10.3390/ijms17111833

[…] performed using the benjamini and hochberg method. to analyze lists of significantly deregulated genes after dep extract treatments (cut-off p-value < 0.05, fold change > 1.5, or < 0.6), a toppfun tool was used [56]. functional analysis identified numerous over-represented terms in several categories; pathways as a functional category were considered for the analysis., the detection […]

ToppFun institution(s)
Department of Environmental Health, University of Cincinnati, Cincinnati, OH, USA; Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA
ToppFun funding source(s)
Supported by the State of Ohio Computational Medicine Center (ODD TECH 04-042); National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Diseases (NIH/NIDDK) 1U01 DK70219 (Murine Atlas of a Genitourinary Smooth Muscle Development); PHS Grant P30 DK078392 (Cincinnati Digestive Health Center).

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