TopPIC specifications

Information


Unique identifier OMICS_10534
Name TopPIC
Alternative name TOP-Down Mass Spectrometry Based Proteoform Identification and Characterization
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input data The input of TopPIC consists of a protein database file in the FASTA format and a spectral data file in the msalign format, which is similar to the MGF file format.
Output data TopPIC outputs a tab delimited text file and a collection of html files for identified proteoforms.
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Advanced
Version 1.0.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Xiaowen Liu <>

Publications for TOP-Down Mass Spectrometry Based Proteoform Identification and Characterization

TopPIC institution(s)
Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA
TopPIC funding source(s)
The research was partially supported by the National Institute of General Medical Sciences, National Institutes of Health (NIH) through Grant R01GM118470.

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