TopPred protocols

TopPred specifications

Information


Unique identifier OMICS_07268
Name TopPred
Alternative name TOP-PRED
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, Pascal
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10
Stability No
Maintained No

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Publications for TopPred

TopPred IN pipelines

 (2)
2016
PMCID: 4950565
PMID: 27478708
DOI: 10.7717/peerj.2221

[…] program (http://www.ebi.ac.uk/tools/clustalw2/) and these results were represented using gendoc 2.7 (http://www.nrbsc.org/gfx/genedoc/index.html). the topology of liv-adipor was predicted using the toppred 1.10 program (claros & von heijne, 1994) and phylogenetic analysis was performed using the mega 6 (molecular evolutionary genetics analysis version 6.0.) program with the neighbor-joining […]

2009
PMCID: 2709373
PMID: 19403529
DOI: 10.1074/jbc.M109.008094

[…] fig. s2 were aligned using clustalw in the megaalign component of the lasergene software package (dnastar). signal sequences and transmembrane helices were predicted using the programs signalp and toppred, respectively (26, 27)., as noted in the introduction, our previous custom genechip-based, whole genome transcriptional profiling of b. thetaiotaomicron grown in a variety of mm formulations […]

TopPred institution(s)
Ecole Normale Superieure, Laboratoire de Genetique Moleculaire, CNRS URA 1302, Paris, France; Karolinska Institute Center for Structural Biochemistry, NOVUM, Huddinge, Sweden
TopPred funding source(s)
Supported by grants from the Swedish Medical Research Council and the Axelsson-Johnsson Foundation.

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