TOUCHSTONE specifications

Information


Unique identifier OMICS_24615
Name TOUCHSTONE
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publications for TOUCHSTONE

TOUCHSTONE citations

 (2)
library_books

Protein protein docking using region based 3D Zernike descriptors

2009
BMC Bioinformatics
PMCID: 2800122
PMID: 20003235
DOI: 10.1186/1471-2105-10-407

[…] ispensable component in a flexible docking prediction in combination with explicit conformational sampling scheme, such as "ab initio" structure modeling methods (e.g. ROSETTA [], TASSER [], CABS [], TOUCHSTONE [],) and molecular dynamics approaches [,], that are aimed at handling alternative conformation explicitly. Since even the state-of-the-art ab initio modeling methods are still not capable […]

library_books

Ab initio modeling of small proteins by iterative TASSER simulations

2007
BMC Biol
PMCID: 1878469
PMID: 17488521
DOI: 10.1186/1741-7007-5-17

[…] ]. Using the ROSETTA program [], Simon et al reported 73 successful structure predictions out of 172 target proteins with lengths of < 150 residues, with Cα-RMSD < 7Å in the top five models []. Using TOUCHSTONE-II software, Zhang et al reported 83 foldable cases from 125 target proteins (up to 174 residues) with Cα-RMSD < 6.5Å in the top five models []. Recently, Bradley et al demonstrated an exci […]

TOUCHSTONE institution(s)
Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, NY, USA; Faculty of Chemistry, Warsaw University, Warsaw, Poland
TOUCHSTONE funding source(s)
Supported in part by the Division of General Science of the National Institutes of Health (grant numbers GM-37408 and GM- 48835).

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