Tool stats & trends
Looking to identify usage trends or leading experts?
|Restrictions to use||None|
|User data submission||Not allowed|
- person_outline Florence Jungo
Publication for Tox-Prot
Venom gland transcriptome analyses of two freshwater stingrays (Myliobatiformes: Potamotrygonidae) from Brazil
[…] jected to a BLASTx analysis (with e-value threshold of 10−5 and matching to the top hits) against the following databases: NCBI nonredundant (nr) protein sequences, UniProtKB and UniProtKB/Swiss-Prot Tox-Prot. The Trinotate software, contained within the Trinity package, was used for functional annotation, including Gene Ontology (GO) terms and presence and location of signal peptide cleavage site […]
Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia)
[…] toxin identification [, ]. Firstly, only sequences with Reciprocal Blast Best Hit (RBBH) or relaxed RBBH (using the top five BLAST hits for reciprocal BLAST) to sequences in the UniProtKB/Swiss-Prot Tox-Prot dataset with query coverage above 70 % were retained. Secondly, BLASTp comparisons were performed against the entire UniProt database supplemented with additional cnidarian protein sequences […]
Bioinformatics Aided Venomics
[…] structural information. When no experimental structure is available, a homology model is generated for each toxin. As of June 2015, 76 species of snakes and 419 proteins and toxins are listed in ISOB.Tox-Prot (http://www.uniprot.org/program/toxins)  is the animal toxin annotation program of UniProtKB and aims to systematically annotate animal venom peptides . Some of the annotations found in C […]
Novel venom gene discovery in the platypus
[…] in unannotated regions were added to the Ensembl genebuild to create an enhanced genebuild. Chains overlapping predicted Ensembl genes were not included, and the genebuild was updated to include the Tox-Prot match. […]
Animal Toxins: How is Complexity Represented in Databases?
[…] TMs:http://www.conoserver.org/?page=about_conotoxins&bpage=ptm UniProtKB (http://www.uniprot.org/):Direct submissions to UniProtKB: http://www.ebi.ac.uk/swissprot/Submissions/spin/ Description of the Tox-Prot annotation program: http://www.expasy.org/sprot/tox-prot/ Keyword list: http://www.uniprot.org/docs/keywlist Document on scorpion toxin nomenclature: http://www.uniprot.org/docs/scorpktx Docu […]
Looking to check out a full list of citations?
Be the first to review Tox-Prot