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TpsDIG specifications

Information


Unique identifier OMICS_34037
Name TpsDIG
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format TPS
Operating system Windows
Computer skills Medium
Version 2.31
Stability Stable
Maintained Yes

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Additional information


http://swordtail.tamu.edu/anyfish/Modeling_body_and_fin_shape_%28morphometrics%29

TpsDIG citations

 (425)
call_split

Unexpectedly rapid evolution of mandibular shape in hominins

2018
Sci Rep
PMCID: 5943523
PMID: 29743608
DOI: 10.1038/s41598-018-25309-8
call_split See protocol

[…] lane. Fortunately, being the hemimandible a flat bone, these features were easily recognizable, even on samples taken from published resources. The pictures we took directly derive from ref.. We used tpsDig2 software to digitize 9 landmarks as to adequately describe the lower jaw profile (fig. 4). Gmm also returns the Centroid Size (the square root of the sum of squared distances between each land […]

library_books

Modularity promotes morphological divergence in ray finned fishes

2018
Sci Rep
PMCID: 5940925
PMID: 29740131
DOI: 10.1038/s41598-018-25715-y

[…] Landmarks and semi-landmarks were digitized with TPSDig2 and superimposed using the package geomorph for R. The phylomorphospace analysis, covariance ratio and rate ratio were also computed using the package geomorph. The observed correlation matric […]

library_books

Morphometric assessment of pterosaur jaw disparity

2018
R Soc Open Sci
PMCID: 5936930
PMID: 29765665
DOI: 10.1098/rsos.172130

[…] ce of the mandible), five points between landmarks 2 and 3, and 20 points between landmarks 3 and 1 (ventral surface of the mandible). The fixed and SLMs were applied digitally to all specimens using tpsDig []. To remove the noise effects of size, position and rotation, all 43 landmarks were aligned using a generalized Procrustes analysis (GPA) []. During the GPA, the SLMs were allowed to iterativ […]

library_books

Shape variation and modularity of skull and teeth in domesticated horses and wild equids

2018
Front Zool
PMCID: 5907714
PMID: 29713365
DOI: 10.1186/s12983-018-0258-9

[…] e , Fig. , Additional file , , and ) following Seetah et al. [] for the upper teeth that was adapted for the lower teeth. The landmark coordinates were collected on high resolution photographs using TPSDig2 []. The photographs were all taken in a standardized manner using a Canon Eos 600d with a Canon EF 24-105 mm f/4 L S USM lens from lateral and dorsal view with a scale bar for size reference. […]

library_books

Taxonomic revision of the long nosed armadillos, Genus Dasypus Linnaeus, 1758 (Mammalia, Cingulata)

2018
PLoS One
PMCID: 5889077
PMID: 29624590
DOI: 10.1371/journal.pone.0195084

[…] an 18–55mm lens set at 18 mm focal length. The camera was positioned perpendicular to the table on which each skull rested at a distance of 195 mm from the focal plane. Landmarks were recorded using tpsDig version 2.17 []. Coordinates of each landmark were aligned, and the effects of location, orientation and scale were removed through a Generalized Procrustes Analysis [] using the package geomor […]

library_books

Adaptive phenotypic plasticity in a clonal invader

2018
Ecol Evol
PMCID: 5938463
PMID: 29760888
DOI: 10.1002/ece3.4009

[…] (Bookstein, ; Zelditch et al., ). After transforming shell images into Thin‐Plate Spline (tps) format, we placed 20 Cartesian landmarks (Figure ) with the programs tpsUtil version 1.64 (Rohlf, ) and tpsDig version 2.22 (Rohlf, ), respectively. A Procrustes superimposition of the landmarks, which filters out the location, scale, and rotational information of the landmarks (Rohlf & Slice, ), and ce […]

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