tQN pipeline

tQN specifications

Information


Unique identifier OMICS_02605
Name tQN
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for tQN

tQN IN pipeline

2017
PMCID: 5376755
PMID: 28275007
DOI: 10.15252/emmm.201606975

[…] raw fluorescent signals and to obtain log r ratio (lrr) and b allele frequency (baf) values. asymmetry in baf signals due to bias between the two dyes used in illumina assays was corrected using the tqn normalization procedure (staaf et al, 2008). we used the circular binary segmentation algorithm (venkatraman & olshen, 2007) to segment genomic profiles and assign corresponding smoothed […]

tQN institution(s)
Department of Oncology, Clinical Sciences, Lund University, Lund, Sweden

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