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Trace editors and viewers (Sanger sequencing analysis)

Modern applications of Sanger DNA sequencing often require converting a large number of chromatogram trace files into high-quality DNA sequences for downstream analyses. Relatively few software tools are available to assist with this process.

Unipro UGENE
Desktop

Unipro UGENE

Assists molecular biologists without much expertise in bioinformatics to…

Assists molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data. unipro UGENE supports multiple biological data formats and allows the retrieval of…

SeqTrace
Desktop

SeqTrace

Makes it easy to quickly generate high-quality finished sequences from a large…

Makes it easy to quickly generate high-quality finished sequences from a large number of trace files.

DNAApp
Desktop

DNAApp

A native app that can decode and display ab1 sequencing file on Android and iOS.

A native app that can decode and display ab1 sequencing file on Android and iOS.

Fragment…
Web

Fragment Analysis for CE instrument

Provides automatic quantitative fragment analysis for the output data from…

Provides automatic quantitative fragment analysis for the output data from Capillary Electrophoresis (CE). Fragment Analysis for CE instrument is a web platform that offers analysis (including…

abiview
Desktop

abiview

Displays the trace in an ABI sequencer file. abiview is an Emboss tool that…

Displays the trace in an ABI sequencer file. abiview is an Emboss tool that reads in an ABI sequencer trace file and graphically displays the data. The probabilities of each of the 4 nucleotide bases…

VectorFriends
Desktop

VectorFriends

An integrated and user-friendly sequence analysis software tool for molecular…

An integrated and user-friendly sequence analysis software tool for molecular biologists. VectorFriends includes support for Isothermal assembly. With only a few clicks, Primer3 will pick the best…

TraceViewer
Desktop

TraceViewer

A Java program that allows you to see, print, and edit DNA sequencing traces.

A Java program that allows you to see, print, and edit DNA sequencing traces.

Sequencing…
Desktop

Sequencing Analysis Software

Enables you to basecall, trim, display, edit, and print data from our entire…

Enables you to basecall, trim, display, edit, and print data from our entire line of capillary DNA sequencing instruments for data analysis and quality control.

4Peaks
Desktop

4Peaks

Application for viewing and editing sequence trace files.

Application for viewing and editing sequence trace files.

Chromas
Desktop

Chromas

Allows to view and edit chromatograms (traces) from automated Sanger…

Allows to view and edit chromatograms (traces) from automated Sanger sequencers. Chromas contains format conversion options and batch processing functions to handle many files at once. The software…

DNA…
Desktop

DNA Chromatogram Explorer

A Windows Explorer clone dedicated to DNA sequence analysis and manipulation.…

A Windows Explorer clone dedicated to DNA sequence analysis and manipulation. The Lite version of Chromatogram Explorer is freeware.

Ridom TraceEdit
Desktop

Ridom TraceEdit

Displays the chromatogram files from Applied Biosystems automated sequencers…

Displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format.

Chromaseq
Desktop

Chromaseq

A package in Mesquite that processes chromatograms, makes contigs, base calls,…

A package in Mesquite that processes chromatograms, makes contigs, base calls, etc., using in part the programs Phred and Phrap.

FinchTV
Desktop

FinchTV

Started as the only chromatogram viewer that can display an entire trace in a…

Started as the only chromatogram viewer that can display an entire trace in a scalable multi-pane view.

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