TRACE-RRBS specifications

Information


Unique identifier OMICS_26124
Name TRACE-RRBS
Alternative name Targeted Alignment and Artificial Cytosine Elimination for RRBS
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Some sequencing data from Illumina sequencing platform.
Input format FASTAQ,FASTA
Output format BAM
Biological technology Illumina
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 0.1
Stability Stable
Requirements Bowtie2
Source code URL https://s3-us-west-2.amazonaws.com/mayo-bic-tools/trace-rrbs/trace-rrbs-v0.1.tar.gz
Maintained Yes

Versioning


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Maintainers


  • person_outline Zhifu Sun <>
  • person_outline Saurabh Baheti <>
  • person_outline Rahul Kanwar <>

Publication for Targeted Alignment and Artificial Cytosine Elimination for RRBS

TRACE-RRBS institution(s)
Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA; Department of Medical Oncology, Mayo Clinic, Rochester, MN, USA; Charité - Universitaetsmedizin Berlin, Berlin, Germany; Department of Medical Oncology, Mayo Clinic, Rochester, MN, USA
TRACE-RRBS funding source(s)
Supported by Center for Individualized Medicine at Mayo Clinic Rochester and National Institutes of Health grant 1R21NS062271.

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