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TraceViewer specifications

Information


Unique identifier OMICS_01822
Name TraceViewer
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input format ABI,SCF
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline TraceViewer Team

Additional information


This tool has been replaced by CodonCode Aligner for Windows and MacOS users.

TraceViewer citations

 (3)
library_books

Compounds that enhance the tailing activity of Moloney murine leukemia virus reverse transcriptase

2017
Sci Rep
PMCID: 5529421
PMID: 28747695
DOI: 10.1038/s41598-017-04765-8

[…] -containing GeneScan–500 LIZ Size Standard (Thermo Fisher Scientific, USA), which contains 16 fragments of known size, and size-separated in a 3130xl Genetic Analyzer (Thermo Fisher Scientific, USA). TraceViewer software was used to analyze the data, in which it aligned different run data by using two peaks from the size standard. […]

library_books

Efficient N tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase

2017
Sci Rep
PMCID: 5288710
PMID: 28150748
DOI: 10.1038/srep41769

[…] A length analyses that use DNA-modifying enzymes. Suitable computational tools may have not yet to be developed for this purpose. To facilitate such analyses, we developed a computational tool called TraceViewer, which reads trace data in ABIF format and calibrates runs using the mobility of two user-selected internal control fragments of different sizes that flank the peaks of interest. By using […]

library_books

Elucidating the diet of the island flying fox (Pteropus hypomelanus) in Peninsular Malaysia through Illumina Next Generation Sequencing

2017
PeerJ
PMCID: 5391789
PMID: 28413729
DOI: 10.7717/peerj.3176

[…] XP beads (Beckman Coulter, Inc). The purified samples were sent to 1st BASE laboratories (http://www.base-asia.com/) for Sanger sequencing. The sequencing results were quality trimmed using CodonCode TraceViewer (http://www.codoncode.com/TraceViewer/) and aligned using MAFFT version 7.0 ().A phylogenetic tree () was constructed to support morphology-based identification of site-specific reference […]

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