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trackViewer specifications

Information


Unique identifier OMICS_15850
Name trackViewer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
AnnotationDbi, methods, grid, BiocGenerics, IRanges, GenomicRanges, Rsamtools, S4Vectors, GenomeInfoDb, rtracklayer, BiocStyle, grDevices, GenomicAlignments, tools, Gviz, RUnit, biomaRt, GenomicFeatures, scales, knitr, plotrix, org.Hs.eg.db, R(>=3.1.0), graph, TxDb.Hsapiens.UCSC.hg19.knownGene, Rgraphviz, VariantAnnotation, htmlwidgets, InteractionSet, grImport
Maintained Yes

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Documentation


Maintainer


  • person_outline Jianhong Ou <>

trackViewer citation

library_books

Genes with mutation significance were highly associated with the clinical pattern of patients with breast cancer

2017
PMCID: 5716716
PMID: 29228676
DOI: 10.18632/oncotarget.21453

[…] mutsig genes were visualized using oncoprint [, ] and plotted with r package complexheatmap []. in order to visualize the mutation positions and patterns, lollipop plot was created using r package trackviewer [], where the x-axis was the position of amino acid and the y-axis was the occurrence of mutations on the given position and the dominant types of mutations were annotated by different […]


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