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TrackVis specifications


Unique identifier OMICS_28192
Name TrackVis
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
License Academic Research End-User Software License
Computer skills Medium
Version 0.6.1
Stability Stable
Registration required Yes
Maintained Yes


No version available



  • person_outline TrackVis Team

TrackVis citations


The effect of the total small vessel disease burden on the structural brain network

Sci Rep
PMCID: 5945601
PMID: 29748646
DOI: 10.1038/s41598-018-25917-4
call_split See protocol

[…] hod. To construct the structural connections between the 90 brain regions, deterministic whole-brain fiber tracking was performed using the Fiber Assignment by Continuous Tracking (FACT) algorithm of TrackVis ( with fractional anisotropy threshold of 0.2 and turning angle threshold of 45°. […]


Impaired Prefrontal Amygdala Pathway, Self Reported Emotion, and Erection in Psychogenic Erectile Dysfunction Patients With Normal Nocturnal Erection

Front Hum Neurosci
PMCID: 5928255
PMID: 29740301
DOI: 10.3389/fnhum.2018.00157
call_split See protocol

[…] artifact were corrected. The main pipeline processing steps included diffusion tensor estimation, FA calculation and fiber tract reconstruction (Chen et al., ). Diffusion toolkit toolbox ( was implemented to reconstruct the fiber tracts. The whole-brain fiber tracking was performed based on the Fiber Assignment by Continuous Tracking (FACT) algorithm and the propagation wa […]


Childhood Emotional Abuse Moderates Associations Among Corticomotor White Matter Structure and Stress Neuromodulators in Women With and Without Depression

Front Neurosci
PMCID: 5925965
PMID: 29740273
DOI: 10.3389/fnins.2018.00256
call_split See protocol

[…] d to aid in interpreting their functional significance. To anatomically validate the affected tracts, deterministic tractography was performed in subjects' native space using Camino and visualized in TrackVis (; Wang et al., ). Significant voxels were used as seeds for streamline tractography using the fiber assignment by continuous tracking (FACT) algorithm. Streamlines were terminate […]


In Vivo Multimodal Magnetic Resonance Imaging Changes After N Methyl d Aspartate Triggered Spasms in Infant Rats

PMCID: 5911983
PMID: 29713308
DOI: 10.3389/fneur.2018.00248
call_split See protocol

[…] pulses, a 4-ms diffusion gradient duration (δ), a gradient amplitude (G) of 46.52 mT/m, and the Jones 30 gradient scheme.Postprocessing analysis was performed using Diffusion Toolkit software ( The cingulate cortex of each rat was selected and the fractional anisotropy (FA) and mean diffusivity (MD) were calculated from the diffusion tensor parametric maps. Subsequently, repe […]


Anatomy of the dorsal default mode network in conduct disorder: Association with callous unemotional traits☆

PMCID: 5945604
PMID: 29413533
DOI: 10.1016/j.dcn.2018.01.004

[…] 0.5 mm using Euler integration with a b-spline interpolation of the tensor field (), with an FA threshold of 0.2, and an angle threshold of 30°. Diffusion maps and tractography data were exported to TrackVis () for manual tract dissection. […]


Influence of region of interest designs on quantitative measurement of multimodal imaging of MR non enhancing gliomas

PMCID: 5920197
PMID: 29725480
DOI: 10.3892/ol.2018.8319
call_split See protocol

[…] kness of 3 mm and no intersection gap. ADC and FA maps were processed using Diffusion Toolkit (Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA; […]


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TrackVis institution(s)
Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Boston, MA, USA
TrackVis funding source(s)
Supported by MGH GCRC and NIMH Grant 5R01MH064044.

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