TraFiC specifications

Information


Unique identifier OMICS_18091
Name TraFiC
Alternative name Transposon Finder in Cancer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
PCAP-core, RepeatMasker, Bedtools
Source code URL https://codeload.github.com/cancerit/TraFiC/tar.gz/1.0.0
Maintained Yes

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Publication for Transposon Finder in Cancer

TraFiC institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK; Department of Physiology, School of Medicine–Center for Resesarch in Molecular Medicine and Chronic Diseases, Instituto de Investigaciones Sanitarias, University of Santiago de Compostela, Spain; [etc…]
TraFiC funding source(s)
This work was is supported by a Marie Curie Fellowship FP7-PEOPLE-2012-IEF (project number 328264), the Wellcome Trust, the Chordoma Foundation, the Skeletal Cancer Action Trust, the European Molecular Biology Organization long-term fellowships (LTF 1203-2012 and 1287-2012), the Wellcome Trust Senior Clinical Fellows, the Research Foundation Flanders (FWO), the Wellcome Trust Intermediate Clinical Research Fellowship (WT100183MA), the CRUK Clinician Scientist fellowship, the National Institute for Health Research, the University College London Hospitals Biomedical Research Centre, the Cancer Research UK University College London Experimental Cancer Centre, the Brussels Region–Impulse Programme Life Sciences, the NIHR Cambridge Biomedical Resource Centre, the European Union (BASIS), the Wellcome Trust, CRUK grant C5047/A14835, the Dallaglio Foundation, the Bob Champion Trust, the Orchid Cancer appeal, the RoseTrees Trust, the North West Cancer Research Fund, Big C, the Grand Charity of Freemasons, the Biomedical Research Centre at the Institute of Cancer Research and the Royal Marsden NHS Foundation Trust, the NIHR, Hutchison Whampoa Limited, Human Research Tissue Bank (Addenbrookes Hospital), CRUK Cambridge Research Institute Histopathology, In-situ Hybridisation Core Facility, Genomics Core Facility Cambridge, and Cambridge University Hospitals Media Studio.

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