TraFiC statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool TraFiC
info

Tool usage distribution map

This map represents all the scientific publications referring to TraFiC per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Transposable element prediction chevron_right
Want to access the full stats & trends on this tool?

Protocols

TraFiC specifications

Information


Unique identifier OMICS_18091
Name TraFiC
Alternative name Transposon Finder in Cancer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
PCAP-core, RepeatMasker, Bedtools
Source code URL https://codeload.github.com/cancerit/TraFiC/tar.gz/1.0.0
Maintained Yes

Download


download.png

Versioning


No version available

Publication for Transposon Finder in Cancer

TraFiC citations

 (5)
library_books

Epilepsie révélant une chorée acanthocytose: à propos d’un cas

2016
PMCID: 5072886
PMID: 27795769
DOI: 10.11604/pamj.2016.24.172.9686

[…] ussitôt après la première crise. Ceci s’explique par le risque accru de développer de nouvelles crises et par les complications associées aux crises tonico-cloniques (morsures de langue, accidents de trafic…). Les crises convulsives répondent généralement aux antiépileptiques standards comme la phenytoine et le valproate de sodium. La lamotrigine et le carbamazepine peuvent aggraver quant à eux le […]

library_books

Les accidents de scooter chez l'enfant au CHU Aristide Le Dantec de Dakar: à propos de 74 cas

2016
PMCID: 4856495
PMID: 27200137
DOI: 10.11604/pamj.2016.23.32.8708

[…] talier Universitaire National de Fann qui reçoit les enfants victimes de traumatismes crânio-encéphaliques. Les accidents de scooter sont plus fréquents aux heures de pointe. Ce sont des heures où le trafic routier est intense. La vitesse excessive des scooters, l'absence de respect du code de la route par les conducteurs et l'imprudence des enfants qui veulent rapidement arriver au domicile famil […]

call_split

Transposable element detection from whole genome sequence data

2015
Mob DNA
PMCID: 4696183
PMID: 26719777
DOI: 10.1186/s13100-015-0055-3
call_split See protocol

[…] hg19 coordinates via liftOver. Insertion coordinates were padded by +/- 100 bp and compared via BEDTools v2.23. Lee et al. [] (Tea) and Helman et al. [] (TranspoSeq) share 7 samples, Tubio et al. [] (TraFiC) and Helman et al. (TranspoSeq) share 15 samples. No samples are shared between Lee et al. and Helman et al. The overall Jaccard distance between TranspoSeq and Tea results across shared sample […]

library_books

Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired end sequencing analysis

2015
BMC Genomics
PMCID: 4498532
PMID: 26159513
DOI: 10.1186/s12864-015-1685-z

[…] re of junction fragments by hybridization [, , ]; others have used Illumina whole genome sequencing and bioinformatic tools such as TEA and TranspoSeq (which rely on presence of L1 sequence) [, ] and TraFiC (which also detects transductions that lack L1 sequence) [] to identify likely L1 insertion and transduction [] events; while Rodic et al. [] used staining with well-validated polyclonal and mo […]

library_books

Les accidents du travail dans le transport urbain en commun de la ville province de Kinshasa, République Démocratique du Congo: une étude transversale descriptive

2014
PMCID: 4317066
PMID: 25667703
DOI: 10.11604/pamj.2014.19.41.4020

[…] de survenue, nous avons retenu les accidents ayant eu lieu durant les douze mois précédant l'enquête. Les accidents ont été distingués en deux groupes: premièrement les accidents de circulation ou du trafic routier survenant sur la voie publique impliquant au moins un véhicule et au moins une victime, secondairement les autres accidents non liés à la circulation routière. Parmi ces derniers, ont é […]


Want to access the full list of citations?
TraFiC institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK; Department of Physiology, School of Medicine–Center for Resesarch in Molecular Medicine and Chronic Diseases, Instituto de Investigaciones Sanitarias, University of Santiago de Compostela, Spain; [etc…]
TraFiC funding source(s)
This work was is supported by a Marie Curie Fellowship FP7-PEOPLE-2012-IEF (project number 328264), the Wellcome Trust, the Chordoma Foundation, the Skeletal Cancer Action Trust, the European Molecular Biology Organization long-term fellowships (LTF 1203-2012 and 1287-2012), the Wellcome Trust Senior Clinical Fellows, the Research Foundation Flanders (FWO), the Wellcome Trust Intermediate Clinical Research Fellowship (WT100183MA), the CRUK Clinician Scientist fellowship, the National Institute for Health Research, the University College London Hospitals Biomedical Research Centre, the Cancer Research UK University College London Experimental Cancer Centre, the Brussels Region–Impulse Programme Life Sciences, the NIHR Cambridge Biomedical Resource Centre, the European Union (BASIS), the Wellcome Trust, CRUK grant C5047/A14835, the Dallaglio Foundation, the Bob Champion Trust, the Orchid Cancer appeal, the RoseTrees Trust, the North West Cancer Research Fund, Big C, the Grand Charity of Freemasons, the Biomedical Research Centre at the Institute of Cancer Research and the Royal Marsden NHS Foundation Trust, the NIHR, Hutchison Whampoa Limited, Human Research Tissue Bank (Addenbrookes Hospital), CRUK Cambridge Research Institute Histopathology, In-situ Hybridisation Core Facility, Genomics Core Facility Cambridge, and Cambridge University Hospitals Media Studio.

TraFiC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TraFiC