transAlign pipeline

transAlign specifications


Unique identifier OMICS_22342
Name transAlign
Alternative name translated alignments
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Maintained No


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Publication for translated alignments

transAlign citation

PMCID: 5749818

[…] the dna of the target specimen was degraded and/or the match of primers to template dna was poor. both rbcl and matk sequences were aligned using the back-translation sequence alignment program, transalign, to identify sequences with frameshift mutations (bininda-emonds, 2005). after filtering out contaminants and correcting editing errors, the sequences were uploaded to bold […]

transAlign institution(s)
Lehrstuhl für Tierzucht, Technical University of Munich, Freising-Weihenstephan, Germany
transAlign funding source(s)
Supported by the NGFN-funded project "Bioinformatics for the Functional Analysis of Mam- malian Genomes" (BFAM).

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